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YalePharma Glossary

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A
Acclimatization
The biological process whereby an organism adapts to a new environment. One example is the process of developing microorganisms that degrade toxic wastes in the environment.

Accommodation Schedule
Defines all areas that can influence unit operations required for manufacturing, and relationships and flows between them.

Account Policy
Specifies how passwords must be defined and employed for all user accounts on a system. It specifically addresses the issues of password aging, password uniqueness, and locking a user account because of invalid logon attempts. CFR 21 Part 11 mandates technical controls in these areas specifically.

Acid
A compound of an electronegative element or radical with hydrogen; it form salts by replacing all or part of the hydrogen with an electropositive element or radical. Or, a hydrogen-containing substance that when dissolved in water dissociates to produce one or more hydrogen ions (H+).

Acid Feed
Injection of an acid into a liquid stream to make it less alkaline (pH adjustment).

Action Point
A value set to identify when a parameter has drifted outside the operating range (Acceptance Criteria). A documented response is usually required.

Activated Carbon
Material used to adsorb organic impurities from water. Derived from wood, lignite, pulp-mill char, blood, etc. The source material is initially charred at high temperature to convert it to carbon. The carbon is then "activated" by oxidation from exposure to high temperature steam. It comes in granular or powdered form.

Active Immunity
The formation of an antibody that can be stimulated by infection or vaccination.

Active Ingredient
Any component that is intended to furnish pharmacological activity or other direct effect in the diagnosis, cure, mitigation, treatment, or prevention of disease, or to affect the structure or any function of the body of man or other animals. The term includes those components that may undergo chemical change in the manufacture of the drug product and are present in the drug product in a modified form intended to furnish the specified activity or effect.

Active Pharmaceutical Ingredient

Active Site
The region of a protein molecule that binds the specific substrate and chemically modifies it into the new product (in an enzyme) or interacts with it (in a receptor).

Active Transport
Energy-requiring transport of a solution across a membrane in the direction of increasing concentration.

Actual Yield
The quantity that is actually produced at any appropriate phase of manufacture, processing, or packaging of a particular drug product.

Adenine (A)
A purine base, 6-aminopurine, occurring in RNA (ribonucleic acid) and DNA (deoxyribonucleic acid) and as a component of adenosine triphosphate.

ADR
see: Adverse Drug Reaction

Adsorption
Adhesion of the molecules of a gas, liquid or dissolved substance to a surface because of chemical or electrical attraction - typically accomplished with granular activated carbon to remove dissolved organics and chlorine. The attachment of charged particles to the chemically active groups on the surface and in the pores of an ion exchanger.

Adventitious Agents
Acquired, sporadic, accidental contaminants.

Adverse Agents
Undesired effects or toxicity due to exposure (often but not limited to a drug or medical device).

Adverse Drug Reaction (ADR)
An undesirable effect that may be caused by a study drug.

Advisory Alarm
An alarm indicating a drift of a monitored parameter toward an out-of-spec condition. It is advisory in that no GMP violation has occurred, and is used to advise corrective action before an action alarm can happen.

Aerobe
An organism that can live and grow only in the presence of oxygen.
1. Facultative aerobe: one which normally thrives in the absence of oxygen, but which may acquire the faculty of living in the presence of oxygen.
2. Obligate aerobe: one that cannot live without air.

Aerobia
The plural of aerobe.

Aerobic
Living in air.

Aerobic Bacteria
Bacteria capable of growing in the presence of Oxygen.

Aerobion
see: Aerobe

Aerosol
A product that is dispensed by a propellant from a metal can up to a maximum size of 33.8 fluid ounces (1000 mL) or a glass or plastic bottle up to a size of 4 fluid ounces (118.3 mL), other than a rim-vented container.

Aerosol
A gaseous suspension of fine (100µm or smaller in size) solid or liquid particles.

Aerosol Photometer
Light-scattering mass concentration indicating instrument with a threshold sensitivity of at least 10 to the negative third power microgram per liter for 0.3µm diameter DOP (Dioctyl Phthalate) concentrations over a range of 10 to the fifth power times the threshold sensitivity. Photometers may include hand-held remote meter probes that can scan for airborne contaminants in HEPA filters, in penetrations around frames, seals and plenums, and in hoods and work stations.

AES
see: Auger Electron Spectroscopy

Agar
A complex mixture of polysaccharides obtained from marine red algae, used as an emulsion stabilizer in foods, as a sizing in fabrics, as a gelling agent and as a solid substrate or media for the laboratory culture of microorganisms. Agar melts at 100ºC and when cooled below 44ºC forms a stiff and transparent gel. Microorganisms are seeded and grown on the surface of the gel.

Agarose
A highly purified form of agar.

Agarose Gel Electrophoresis
A method used to separate, identify, and purify molecules of different molecular weight and/or structure. It is specifically applied to the separation of protein or DNA fragments where it is rapid, simple, and accurate, and the separated molecules can be visualized directly by staining with dyes. The electrophoretic migration rate of molecules through agarose gel is dependent on the following parameters:
1. Molecular size: molecules pass through the gel at rates that are inversely proportional to the log of their molecular weight.
2. Agarose concentration: a molecule of a given size migrates at different rates through gels containing different concentrations of agarose.
3. Molecular conformation: a molecule of the same molecular weight but of a different conformation will migrate at different rates. Generally, closed circular or globular forms will migrate faster than linear forms.
4. Electric current: at low voltages the rate of migration is proportional to the voltage, but as the voltage is increased the rate of migration of high molecular weight fragments is increased differentially.

Agene
Nitrogen Trichloride (NCl3).

Agglomerate
Suspended solids clustered together to form larger clumps or masses that are easier to remove by filtration or settling.

Agglutination
The sticking together of insoluble antigens such as bacteria, viruses or erythrocytes by a particular antibody. Agglutination assays are used to type human blood before a transfusion.

AHF (Antihemophilic Factor)
In the clotting of blood it is also known as Factor VIII.

Airborne Particulate Cleanliness Classes
Statistically allowable number of particles equal to, or larger than 0.5µm in size per cubic foot of air. According to ISO 14644-1, a classification number, N, shall designate airborne particulate cleanliness.

Air Change Rate
The number of times the total air volume of a defined space is replaced in a given unit of time. This is computed by dividing the total volume of the subject space (in cubic feet) into the total volume of air exhausted from (or supplied to) the space per unit of time.

Air Cleaners
Filtration systems that may be freestanding or installed in a ceiling or wall to remove contaminants such as bacteria, viruses, and dust from the air. Air cleaners may incorporate HEPA filters.

Airflow Visualization
Using chemical smoke or fog to visualize flow patterns in a cleanroom or clean space.

Air-Lift Bioreactor
A reactor in which the source of agitation is air sparged upwards through a draft tube - most widely used for cell culture applications and monoclonal antibody production.

Airlock
A room or space designed to act as a means of segregating areas of different air classification or quality. It may contain a method to remove particulate contamination from clean room garments as personnel pass through, and usually includes HEPA filtered air supply and interlocking doors. Airlocks pressure will "float" between those of the spaces being protected. With all doors closed, the airlock pressure will be somewhere between that of the highest adjoining room and that of the lowest adjoining room as air flows through it from room to room. "Ventilated airlocks" are in neutral ducted air balance (supply CFM = return CFM).

Air Velocity Meters/Monitors
Meters to measure and indicate the force and speed of airflow. Meters may use a variety of probes for measuring near HEPA filters and at right angles. Monitors check and record air velocity.

Alarms
Audible or visual signals used to warn of unacceptable conditions at monitored sites. They may be buzzers, horns, speakers, bells, or warning lights. They can be Advisory, Alert, or Action alarms. The first two are for operation and maintenance information, to alert of abnormal situations that do not compromise product SISPQ. The Action alarm is for GMP records, indicating that product SISPQ may have been compromised, but Alert alarms are also usually recorded.

Albumin
Commonly, the white of egg is a simple protein widely distributed throughout the tissues and fluid of plants and animals. Soluble in pure water it is also precipitable from a solution by mineral acids, and coagulable by heat in acid or neutral solution.

Albuminoid
Resembling albumin, a simple protein present in horny and cartilaginous tissues, insoluble in neutral solvents. Keratin, elastin, and collagen are albuminoids.

Alert Point
Used in determining when a parameter is drifting toward extremes of the operating range.

Aliquot
Of, pertaining to, or designating an exact divisor or factor of a quantity, specially of an integer. To divide out a sample to multiple containers for multiple analytical tests.

Alkalinity
An expression of the total amount of basic anions (hydroxyl groups) present in a solution. In water analysis, it also represents the presence of carbonate, bicarbonate, and occasionally borate, silicate, and phosphate salts that react to produce hydroxyl groups. Bicarbonate and carbonate ions are expected to be in most waters. Hydroxide may occur in water that has been softened by the lime soda process or has been in contact with fresh concrete. Alkalinity furnishes a guide in choosing appropriate treatment of either raw water or plant effluents.

Allantoic Fluid
The clear white portion of an egg. In influenza vaccine manufacturing, the virus is propagated in the embryonic chick and sloughed into the allantoic fluid that is harvested to produce the vaccine.

Allele
Alternative form of a genetic locus; a single allele for each locus is inherited separately from each parent (e.g., at a locus for eye color the allele might result in blue or brown eyes)

Allergenic Extract
An extract in a solvent of a substance that causes an allergic reaction. They are relative crude drugs by contemporary standards and are manufactured by specialty companies and in some cases, by a practicing allergist. Also, allergenic extracts are generally difficult to filter since they most frequently are extracts of natural substances such as foods, house dust, animal hair, etc.

Alum
Aluminum sulfate, commonly added during municipal water treatment to cause insoluble colloids to coalesce into larger particles that can be removed by settling.

Alzheimer's Disease
A disease that causes memory loss, personality changes, dementia and, ultimately, death. Not all cases are inherited, but genes have been found for familial forms of Alzheimer's disease.

Ambient
The normal environment conditions such as temperature, relative humidity, or room pressure of a particular area under consideration.

Ames Test
A simple bacterial test for carcinogens.

Amine
A substance that may be derived from ammonia by the replacement of one or more of the hydrogen atoms by hydrocarbon radicals.

Amino Acids
Any of a group of twenty hydrocarbon molecules (containing the radical group NH2) linked together in various combinations to form proteins in living things. Synthesized by living cells or obtained as essential components of the diet of human and animals, these twenty amino acids are divided into four (4) groups on the basis of their side-chain properties:
1. Neutral, hydrophobic side chains,
2. Neutral, hydrophilic side chains,
3. Acid, hydrophilic side chains,
4. Basic, hydrophilic side chains.

In addition to the twenty common amino acids there are less common derivatives (e.g. hydroxyproline, found in collagen) formed by the modification of a common amino acid.
Ampholyte
Amphoteric electrolyte. Electrolyte that can either give up or take on a hydrogen ion and can thus behave as either an acid or a base.

Amphoteric
Having two opposite characteristics.

Ampicillin
An antibiotic widely used in clinical treatment and rDNA research. It is a derivative of penicillin, which kills bacteria by interfering with the synthesis of the cell wall.

Amplification
An increase in the number of copies of a specific DNA fragment; can be In Vivo or In Vitro.

Amplification
The production of additional copies of a chromosomal sequence, found as either intrachromosomal or extrachromosomal DNA.

Ampoule or Ampule
A small glass vial sealed after filling and one of the earliest devices developed for safe storage of sterile injectable unit.

Amyotrophic Lateral Sclerosis
An inherited, fatal degenerative nerve disorder, also known as Lou Gehrig's disease.

Anabolism
The intracellular process involved in the synthesis of more complex compounds than those involved in catabolism (for example, glucose to glycogen) and requires energy.

Anaerobe
A microorganism that thrives best, or only, when deprived of oxygen.
1. Facultative anaerobe: one able to grow in the presence or absence of free oxygen.
2. Obligate or obligatory anaerobe: one that will grow only in the absence of free oxygen.

Anaerobic
Relating to an anaerobe.

Anaerobic Bacteria
Bacteria capable of growing in the absence of Oxygen.

Analog
Pertaining to data that consists of continuously variable physical qualities.

Analytical Data Interchange (ANDI)
A generic file format. It was common practice before CFR 21 Part 11 to save information from analytical instruments in this file format. The disadvantage now is that the approach does not allow replaying of data on a different system to yield the same result.

Analytical Method
Small scale process used to characterize and/or separate a mixture, a compound, or an unknown material into its constituent parts or elements.

Ancillary Material
Material used in preparing drugs that does not become a component of the drug (e.g. steam, air, N2, DI water).

ANDI

Anemometer
A device that measures air speed.

Angstrom (?)
A unit of length equal to one hundred-millionth of a centimeter (one ten-thousandth of a micron) used especially to specify radiation wavelengths.

Anion
A negatively charged particle or ion.

Anion Exchange Resin
An ion exchange material that removes anions from solution by exchanging them with hydroxyl ions.

Anneal
The process by which the complementary base pairs in DNA strands combine.

Annealing
A treatment process for steel in which the metal is heated and held at a suitable temperature and then cooled at a suitable rate for the purpose of reducing hardness, improving machinability, facilitating cold working, producing a desired microstructure, or obtaining desired mechanical, physical, or other properties.

Antibiotic
An organic substance of microbial origin (usually mold or actinomycete bacteria) that is either toxic or growth inhibiting for other organisms. Also with the advent of synthetic methods of production, a substance produced by a microorganism or a similar substance (produced wholly or partly by chemical synthesis) which, in low concentrations, inhibits the growth of other microorganisms. Penicillin, tetracycline, and erythromycin are examples of antibiotics.

Antibody
A modified protein molecule present in the blood serum or plasma (and other body fluids), whose activity is associated chiefly with gamma globulin. Produced by the immune system in response to exposure to a foreign substance, it is the body's protective mechanism against infection and disease. An antibody is characterized by a structure complementary to the foreign substance, the antigen that provokes its formation, and is thus capable of binding specifically to the foreign substance to neutralize it.

Antigen
Any of various foreign substances such as bacteria, viruses, endotoxins, exotoxins, foreign proteins, pollen, and vaccines, whose entry into an organism induces an immune response (antibody production, lymphokine production, or both) directed specifically against that molecule. Response may be demonstrated as an increased reaction, such as hypersensitivity (usually protein or a complex of protein and polysaccharide, or occasionally a polysaccharide of high molecular weight), a circulating antibody that reacts with the antigen, or some degree of immunity to infectious disease if the antigen was a microorganism or its products.

Anti-interferon
An antibody to an interferon. Used for the purification of interferons.

Antiseptic
Acting against sepsis. An antiseptic agent is one that has been formulated for use on living tissue such as mucous membranes or skin to prevent or inhibit growth or action of organisms. Antiseptics should not be used to decontaminate inanimate objects.

Antiserum
The blood serum obtained from an animal after has been immunized with a particular antigen. It contains antibodies specific for that antigen as well as antibodies specific for any other antigens with which the animal has previously been immunized.

Antistatic
Reducing static electric charges by retaining enough moisture to provide electrical conduction.

Antistatic Cleaners
Liquid cleaners that enhance surface conductivity of cleanroom tabletops, workstations, and other surfaces.

Antitoxin
An antibody that is capable of neutralizing the specific toxin that stimulated its production in the body. Antitoxins are produced in animals for medical purposes by injection of a toxin or toxoid, with the resulting serum being used to counteract the toxin in other individuals.

API (Active Pharmaceutical Ingredient)
Also called Drug Substance. Any substance or mixture of substances intended to be used in the manufacture of a drug (medicinal) product and that when used in the production of a drug becomes an active ingredient of the drug product. Such substances are intended to furnish pharmacological activity or other direct effect in the diagnosis, cure, mitigation, treatment, or prevention of disease or to affect the structure and function of the body.

API Starting Material
A material used in the production of an API which is itself or is incorporated as a significant structural fragment into the structure of the API. A starting material may be an article of commerce, a material purchased from one or more suppliers under contract or commercial agreement, or it may be produced in-house. Starting materials are normally of defined chemical properties and structure.

Apoenzyme
The protein moiety of an enzyme - determines the specifity of the enzyme reaction.

Application Software
Any executable program developed or modified specially for customer applications.

Appropriated login or Impersonation
Someone using the authorization code, usually user ID and password of another person to secure access to network resources for which he or she does not have privileges or authorization. Can be intentional or not. CFR 21 Part 11 mandates technical controls that prevent this.

Aquifer
An underground layer of permeable rock, sand, or gravel that contains water for wells or springs.

Arithmetic Average Roughness (Ra)
The arithmetic average height of roughness component irregularities from the mean line measured within the sample length (L). This measurement conforms to ANSI/ASME B46.1 "Surface Texture - Surface Roughness, Waviness and Lay". Ra (formerly known as AA or Arithmetic Average in the U.S., and CLA Centerline Average in the U.K.) is usually expressed in microinches (µin), and performed by moving a stylus or profilometer in a straight line along the surface. A consistent and measurable surface finish can be specified for a desired roughness i.e., 9-11 microinch.

"As-Built" Cleanroom
ISO 14644-1 defines the "as built" occupancy state as "condition where the installation is complete with all services connected and functioning but with no production equipment, materials, or personnel present".

Ascomycetes
A family of fungi marked by long spore-containing cells. Form sexual spores called ascospores, which are contained within a sac (a capsule structure). Ergot, truffles, some molds of the genera Neurospora and Aspergillus, and yeasts belong to this category.

Asepsis
A condition in which living pathogenic (causing or capable of causing disease) organisms are absent.

Aseptic
Marked by or relating to asepsis.

Aseptic Processing
Processing conditions designed to achieve a sterile product.

Aseptic Processing Area
Area in which sterile product is formulated, filled into containers, and sealed.

Aseptic Transfer (in Isolators)
The key issue in all contained aseptic environments. Aseptic transfer is essential for change parts, components, and even product to enter and exit an isolator system without sterility challenges. There are an increasing number of ways to make an aseptic transfer. The following is a brief list of some of the key techniques:
1. Alpha Beta Systems Double Door Systems: also called RTPs (Rapid Transfer Ports) and HCT (High Containment Transfer). When mated, the two ports act as one door, protecting the internal and external environments.
2. Alpha Beta Dry Heat Sterilized: similar to Alpha Beta port with the additional safeguard of a heat sterilized seal.
3. UV and Pulsed Light: light sterilization/sanitization. Sterilizing the system by making use of a wide spectrum of light within the transfer chamber.
4. One Shot Systems: basically, two halves coming together. Similar to an Alpha Beta port but simpler, cheaper, and capable of only a single connection.
5. Heat Welded Bag Systems: passed in or passed out using a continuous polyethylene liner which is heat sealed and cut to maintain the integrity of the internal and external environments.
6. Steam Sterilized: the liquid component or powder path is clean steam sterilized after connection and prior to transfer.
7. Autoclave/Depyrogenation/Dryheat: pass through for batch. Use of conventional autoclave to sterilize a canister provided with an Alpha Beta port and filters to allow the passage of steam and safe aspiration on cooling. Depyrogenation/Dryheat uses dry heat to sterilize and at sufficient temperature depyrogenate components, typically glassware, in a batch oven
8. Depyrogenation Tunnel: standard volume glassware entry. Depyrogenation/Dry heat uses dry heat to sterilize and at sufficient temperature to depyrogenate components, typically glassware, in a tunnel allowing continuous input.

ASME Bioprocessing Equipment (BPE- 1997)
An American National Standard that covers, either directly or by reference, requirements for materials, design, fabrication, examination, inspection, testing, certification (for pressure systems), and pressure relief (for pressure systems) of vessels and piping for bioprocessing systems, including sterility and cleanability (Part SD), dimensions and tolerances (Part DT), surface finish requirements (Part SF), material joining (Part MJ), and equipment seals (Part SG) for the bioprocessing systems in which the pressure vessels and associated piping are involved. This Bioprocessing Equipment (BPE) Standard does not address all aspects of these activities, and those aspects that are not specifically addressed should not be considered prohibited.
Requirements of this Standard apply to:
1. All parts that contact the product, raw materials, and/or product intermediates during manufacturing, process development, or scale-up.
2. All equipment or systems that are critical part of product manufacture, such as Water For Injection (WFI), clean steam, ultrafiltration, intermediate product storage, and centrifuges. ASME/ANSI B31 Code for Pressure Piping
A number of individually published Sections, each an American National Standard. Rules for each Section reflect the kinds of piping installations considered during its development, as follows:
1. B31.1 Power Piping: piping typically found in electric power generating stations, in industrial and institutional plants, geothermal heating systems, and central and district heating and cooling systems.
2. B31.3 Process Piping: piping typically found in petroleum refineries, chemical, pharmaceutical, textile, paper, semiconductor, and cryogenic plants, and related processing plants and terminals. Certain piping within a facility may be subject to other codes and standards, including but not limited to: (a) ANSI Z223.1 National Fuel Gas Code: piping for fuel gas from the point of delivery to the connection of each fuel utilization device. (b) NFPA Fire Protection Standards: fire protection systems using water, carbon dioxide, halon, foam, dry chemical, and wet chemicals. (c) NFPA 99 Health Care Facilities: medical and laboratory gas systems. (d) Building and plumbing codes, as applicable, for potable hot and cold water, and for sewer and drain systems.
3. B31.4 Pipeline Transportation Systems for Liquid Hydrocarbons and Other Liquids: piping transporting products that are predominately liquids between plants and terminals and within terminals, pumping, regulating, and metering stations.
4. B31.5 Refrigeration Piping: piping for refrigerants and secondary coolants.
5. B31.8 Gas Transportation and Distribution Piping Systems: piping transporting products that are predominately gas between sources and terminals, including compressor, regulating, and metering stations; gas gathering pipelines.
6. B31.9 Building Services Piping: piping typically found in industrial, institutional, commercial, and public buildings, and in multi-unit residences, which does not require the range of sizes, pressures, and temperatures covered in B31.1.
7. B31.11 Slurry Transportation Piping Systems: piping transporting aqueous slurries between plants and terminals and within terminals, pumping, and regulating stations.

Assay
A technique (test) for measuring a biological response or for determining characteristics such as composition, purity, activity, and weight.

Assimilation
The formation of cellular material utilizing small food molecules and energy.

Atmospheric Tank (Fire Code)
A storage tank designed to operate at pressures from atmospheric through 0.5 pounds per square inch (psig) (3.4 kPa).

Atomic Absorption Spectrophotometry
A highly sensitive instrumental technique for identifying and measuring metals in water.

At Rest
HVAC room condition when unmanned, and without machinery operating. Previously called "static condition".

"At-Rest" Cleanroom
ISO 14644-1 defines "at rest" occupancy state as "condition where the installation is complete with equipment installed and operating in a manner agreed upon by the customer and supplier, but with no personnel present".
European Community (EC) defines "at rest" state as "the condition where the installation is complete with production equipment installed and operating but with no operating personnel present". The Medicines Inspectorate, however, further clarifies, "It should normally be taken to mean that ventilation systems are operating and other equipment is present in an operational condition but not in use".

Audit Comment
A feature of the audit trail that aids both originator and reviewer in understanding why the originator performed a specific action. CFR 21 Part 11 does not require entering the reason for a record change, but some predicate rules (such as GLPs) do expect an explanation. It is important that the user interface for entering audit comments prevents users from changing the audit trail itself.

Audit Trail
A computer-generated and time-stamped record of who did what, when. CFR 21 Part 11 requires audit trails to be generated independently of operators. An audit trail must capture all activities related to creating, modifying, and destroying records on a system.

Auger Electron Spectroscopy (AES)
An alternative surface analysis that can detect all elements with an atomic number greater than that of helium with the additional ability to analyze sub micron-diameter features. It is not as quantitative as ESCA and cannot determine the chemical state of an element. The primary advantage of Auger is that when combined with etching, a chemical depth profile can be measured rapidly and can image the distribution on the surface of spatial limitation resolution of 100 to 1,000 angstroms (depending on the equipment capability).

Austenite
A face-centered cubic crystal with high solubility for carbon (about 2%); an allotropic form of iron resulting from steel being heated above the transformation temperature.

Autegoneous Weld
A weld made by fusion of the base material without the addition of filler.

Authentication
The process of identifying a person, system, or company sufficiently to allow access to a system or part of a system.

Authentication Mechanisms
Also known as authority checks, or authorized signers are mechanisms distinct from authorization that grants or denies access to a network resource, authentication programs are used by system administrators to establish and verify as conclusively as possible that a person logging in to the network is who he or she claims to be. FDA says that "authority checks" are to "ensure that only authorized individuals can use the system, electronically sign a record, access the operation or computer system, input or output device, alter a record, or perform operations".

Autoclave
An apparatus into which moist heat (steam) under pressure is introduced to sterilize or decontaminate materials placed within (e.g. filter assemblies, glassware, etc.). Steam pressure is maintained for pre-specified times and then allowed to exhaust. There are two types of autoclaves:
1. Gravity displacement autoclave: this type of autoclave operates at 121ºC. Steam enters at the top of the loaded inner chamber, displacing the air below through a discharge outlet.
2. Vacuum autoclave: this type of autoclave can operate with a reduced sterilization cycle time. The air is pumped out of the loaded chamber before it is filled with steam.

Auto Immune Disease
A disease in which the body produces an immunogenic response against self-antigens. In some cases, predominantly one organ is affected (e.g. hemolytic anemia and chronic thyroiditis); in others, the disease process is diffused through many tissues (e.g. SLE (Systemic Lupus Erythematosis)).

Automated System
Any facility system or piece of equipment that is controlled with limited or no manual intervention.

Automatic Welding
Welding with equipment that performs the welding operation without adjustment of the controls by a welding operator. The equipment may or may not perform the loading and unloading of the work.

Autoradiography
A technique that uses X-ray film to visualize radioactively labeled molecules or fragments of molecules; used in analyzing length and number of DNA fragments after they are separated by gel electrophoresis.

Autosome
A chromosome not involved in sex determination. The diploid human genome consists of 46 chromosomes, 22 pairs of autosomes, and 1 pair of sex chromosomes.

Autotrophs
One of two categories in which microorganisms are classified on the basis of their carbon source. Autotrophs use carbon dioxide as a carbon source.

B

BAC (Bacterial Artificial Chromosome)
A vector used to clone DNA fragments (100-kb to 300-kb insert size; average, 150-kb) in E. Coli cells. Based on naturally occurring F-factor plasmid found in the bacterium E. coli.

Background Contamination
Contamination introduced accidentally in reagents, dilution water, solvents, rinse water, etc., which can be confused with constituents in samples being analyzed.

Background Environment
The environment that surrounds a critical area.

Back-up Copy
A magnetic copy of data, software, user-developed application, or operating parameters associated with an automated system and not considered the original.

Backward Compatibility
A new version of a computer program that can use files and data created with an older version of the same program. A computer is said to be backward compatible if it can run the same software as the previous model. Backward compatibility is important because it eliminates the need to start over when you upgrade to a newer product, but is sometimes sacrificed in favor of a new technology.

Backwash
The countercurrent flow of water through equipment, usually to clean or to recover performance, such as in a resin bed (flow-in at the bottom of the exchanger unit and out at the top) to clean and reclassify the bed after exhaustion. This process of reversing flow may also be applied to filters in order to force contaminants out of plugged pores and passages.

Bacteria
The plural of Bacterium.

Bactericide
An agent that kills vegetative bacteria but not mycobacteria or spores.

Bacteriophage
A virus that exclusively infects bacteria. A protein coat surrounds the genome (DNA or RNA). One of the bacteriophages most extensively studied is the lambda phage, which is also one of the most important viral vectors used in rDNA work. Lambda promoters have been used to express eukaryotic proteins in E.coli.

Bacteriostatic
Inhibiting growth of bacterial organisms without necessarily killing them or their spores.

Bacteriostatic Water
For Injection, U.S.P. Water that serves the same purposes as Sterile Water for Injection, it meets the same standards, with the exception that it may be packaged in either single-dose or multiple-dose containers of not larger than 30-mL size.

Bacterium
Any of a large group of microscopic organisms having round, rod-shaped, spiral, or filamentous unicellular or noncellular bodies that are often aggregated into colonies, are enclosed by a cell wall or membrane (prokaryotes), and lack fully differentiated nuclei. Bacteria range in size from 0.4µm to 2.0µm and may exist as free-living organisms in soil, water, organic matter, or as parasites in the live bodies of plants. Some are disease producing, but most perform necessary functions such as digestion, fermentation, and nitrification. Most of the forms are variously grouped under generic names such as: Alcaligenes, Dialister, Escherichia, Klebsiella, Kurthia, Pasteurella, Salmonella, and Shigella.

Barometer Instrument used to measure atmospheric pressure.

Barrier Isolator
A containment device that utilizes barrier technology for the enclosure of a controlled workspace. There are two main types of isolator: 1. Type 1 Isolator: An isolator designed to protect the product from process-generated and external factors that would compromise its quality. 2. Type 2 Isolator: An isolator designed to protect the product from process-generated and external factors that would compromise its quality and to protect the operator from hazards associated with the product.

Barrier Technology
The technology of using separating environments, whether protecting the world from a product or the product from the world. Containment, barrier isolation and isolation all refer to the same technology, which is enclosing an environment. There are, however, some redefining terms that are gaining favor: 1. Containment - protect the world from the product (as in the case of highly potent compounds or a toxic). 2. Isolation - protect the product from the world (as in the case of a sterile product). 3. ISO 14644-7 "Minienvironments and Isolators" will define further levels of devices

Base
An electropositive element or radical that unites with an acid to form a salt. Or, a substance that when dissolved in water, dissociates to produce one or more hydroxyl ions (OH-).

Base Pair (bp)
Two nucleotides that are in different nucleic acid chains and whose bases pair by hydrogen bonding. In DNA, the nucleotide bases are adenine (A) that always pairs with thymine (T) and guanine (G) which pairs with cytosine (C). In RNA molecules, adenine (A) joins the uracil (U). Two strands of DNA are held together in the shape of a double helix by the bonds between these pairs.

Base Sequence
The order of nucleotide bases in a DNA molecule.

Base Sequence
Analysis A method, sometimes automated, for determining the base sequence.

Baseline
In some analytical procedures a sample is dissolved in water or combined with other reagents for analysis. A "blank" or standard consisting of the same reagents may be analyzed without sample present. This provides a comparative reference point, or baseline, so that the test results can be attributed solely to the sample itself.

Baseline® Pharmaceutical Engineering Guides (ISPE)
A series of industry publications developed in partnership with the US Food and Drug Administration (FDA). Each volume in the series is a collaborative effort of industry leaders representing a broad cross-section of manufacturers and other industry experts. The Guides document current industry practice for facilities and systems used for production of pharmaceutical products and medical devices. They are intended to:

* Establish a baseline approach to new and renovated facility design, construction, commissioning, and qualification that is based upon clear understanding of the type of product and its manufacturing process.
* Prioritize facility design features based upon the impact on product and process.
* Avoid unnecessary spending on facility features that do not contribute to consistent production of quality products.

The Guides include five product manufacturing operation based guides (vertical guides), and three support system/function based guides (horizontal guides):

1. Volume I - Bulk Pharmaceutical Chemicals (1996)
2. Volume II - Oral Solid Dosage Forms (1998)
3. Volume III - Sterile Manufacturing Facilities (1999)
4. Volume VI - Biotech (in progress)
5. Volume -Oral Liquids and Aerosols
6. Volume IV - Water and Steam Systems (in progress)
7. Volume V - Commissioning and Qualification Guide (in progress)
8. Volume VII - Packaging and Warehousing

Basidiomycetes
Reproduce by basidiospores, which are extended from the stalks of specialized cells called the basidia. The class comprises Photobasidiomycetes (smuts and rusts) and the Hymenomycetes (mushrooms and puffballs).

Basis of Design
A design document that describes what the purpose of a given system is and how the system will accomplish its required task. This document is created and approved before the issuance of bid specifications and is often used to develop them. Until the system is developed this is a conceptual document.

Batch
A specific quantity of material produced in a process or series of processes so that is expected to be homogeneous within specified limits. In the case of continuous production a batch may correspond to a defined fraction of the production, characterized by its intended homogeneity. The batch size may be defined either by fixed quantity or the amount produced in a fixed time interval.

Batch Number
A unique combination of numbers and/or letters which specifically identify a batch or lot and from which the production and distribution history can be determined.

Batch Fermentation
The process in which a fixed volume of sterile medium in a vessel is inoculated with a desired organism. The broth is fermented for a defined period to completion, without further additions of media. After discharging the batch, the fermenter is cleaned and rebatched with medium for another cycle. Two other types of fermentation cycles are fed batch and continuous.
Batchwise Control The use of validated in-process sampling and testing methods such that results prove the process has done what it purports to do for the specific batch concerned, assuming control parameters have been appropriately maintained.

Bed
Column of carbon, sand, chromatography, or ion exchange resins through which a liquid passes during operation.

Bed Depth
The height of the exchange or capture material in a column after proper backwashing for effective operation.

Bed Expansion
The effect produced during backwashing; resin particles separate and rise in the column. Regulating backwash flow may control bed expansion caused by the increase in space between resin particles.

Binary Explosive
An explosive material composed of separate components, each of which is safe for storage and transportation and would not in itself be considered as an explosive.

Bioactivity
A protein's ability to function correctly after it has been delivered to the active site of the body (in vivo).

Bioassay
The determination of the biological activity of a substance (e.g. a drug) by observing its effect on an organism (or organ) compared to a standard preparation.

Bioaugmentation
A strategy involved in bioremediation that increases the activity of an organism to break down or metabolize a pollutant. This involves reseeding a waste site with bacteria as they die.

Bioburden
The level and type of microorganisms which may be present in raw materials, API (Active Pharmaceutical Ingredient) starting materials, intermediates, or APIs which have defined limits and should not affect the quality of the API. Bioburden should not be considered contamination unless the levels have been exceeded or defined objectionable organisms have been detected.

Biochemical Oxygen Demand (BOD)
(also see: BOD (Biochemical Oxygen Demand))
Biochemistry
The study of chemical processes in living things. Despite the dramatic differences in the appearance of living things, the basic chemistry of all organisms is strikingly similar. Even tiny, one-celled creatures carry out essentially the same reactions that each cell of a complex organism, such as man, carries out.
Biocide
An agent that can kill all pathogenic and non-pathogenic living organisms, including spores. More general than bacteriocide, biocide includes insecticides and any compound toxic to any living thing.

Biodegradable
Material that can be broken down by biological action.

Bioequivalency
A scientific basis on which generic and brand name drugs are compared with one another. Drugs are bioequivalent if they enter circulation at the same rate when given in similar doses under similar conditions.

Biogenerator
A contained system, such as a fermentor, into which biological agents are introduced along with other materials so as to effect their multiplication or their production of other substances by reaction with the other materials. Biogenerators are generally fitted with devices for regulation, control, connection, material addition, and material withdrawal.

Biohazard
An infectious agent(s), or part thereof, presenting a real or potential risk to human, other animals, or plants, directly through infection or indirectly through disruption of the environment.

Bioinformatics
The use of computers in the life sciences, electronic databases of genomes and protein sequences, and computer modeling of biomolecules and biologic systems.

Biologic
A therapeutic agent derived from living things.

Biological Barrier
An impediment (naturally occurring or introduced) to the infectivity and/or survival of a microbiological agent or eukaryotic cell once it has been released into the environment.

Biological Impurities
Impurities resulting from living matter (bacteria, virus, algae, protozoa, microfungi) and their by-products, including pyrogens (endotoxins).

Biological Indicators
Resistant microorganisms placed into or on various materials to confirm that a sterilization process is effective. They may for instance be placed within a filter in order to determine if a proposed autoclave cycle is effective. After autoclave, they are removed and culture tests are performed to see if the microorganisms were killed.

Biological Oxygen Demand (BOD)
(also see: BOD (Biological Oxygen Demand))

Biological Reactivity Tests, In Vivo
This classification is based on responses to a series of in vivo tests for which extracts, materials and routes of administration are specified. Six Plastic Classes are defined:

1. Class I - Uses a specified dosage of an extract of sample in Sodium Chloride Injection applied either intravenously or intracutaneously into a mouse or a rabbit.
2. Class II - Same as Class I but in addition uses an extract of sample in 1 in 20 Solution of Alcohol in Sodium Chloride Injection applied either intravenously or intracutaneously into a mouse or a rabbit.
3. Class III - Same as Class II but in addition uses an extract of sample in Polyethylene Glycol 400, and an extract of sample in Vegetable Oil, both applied either intraperitoneally or intracutaneously into a mouse.
4. Class IV - Same as Class II but in addition uses an extract of sample in Vegetable Oil applied intraperitoneally or intracutaneously into a mouse or a rabbit. Also uses implant strips of sample into a rabbit.
5. Class V - Same as Class II but in addition uses an extract of sample in Polyethylene Glycol 400, and an extract of sample in Vegetable Oil applied intraperitoneally or intracutaneously into a mouse or a rabbit.
6. Class VI - Same as Class V but in addition uses implant strips of sample into a rabbit.

These tests are designed to determine the biological response of animals to elastomerics, plastics and other polymeric material with direct or indirect patient contact, or by the injection of specific extracts prepared from the material under test. Three tests are described:

1. Systemic Injection Test - Designed to determine the systemic biological responses of animals to plastics and other polymers by the single-dose injection of specific extracts prepared from a sample.
2. Intracutaneous Test - Designed to determine the local biological responses of animals to plastics and other polymers by the single-dose injection of specific extracts prepared from a sample.
3. Implantation Test - Designed to evaluate the reaction of living tissue to the plastic and other polymers by the implantation of the sample (specimen under test) itself into animal tissue. With the exception of the Implantation Test, the procedures are based on the use of extracts that, depending on the heat resistance of the material, are prepared at one of the three standard temperatures: 50°, 70°, and 121°. Therefore, the class designation of a plastic must be accompanied by an indication of the temperature of extraction e.g., IV - 121°, which represents a class IV plastic extracted at 121°).

Biological Safety Cabinets (BSCs)
Bench-top or freestanding cabinets with unidirectional airflow used for handling materials that present a health hazard. The National Institutes of Health (NIH) Guidelines classify them as:

1. Class I - A negative pressure, ventilated cabinet for personnel protection having an inward flow of air away from the operator. The exhaust air is filtered through a HEPA filter (located at rear or top) either into the laboratory or to the outside. This cabinet is designed for general microbiological research with low and moderate risk agents (BL-2 and BL-3 agents), and is used in three operational modes:

a) With a full width open front. The face velocity of the inward flow of air through the full width open front is at least 75' feet per minute.
b) With an installed front closure panel (having four 6-inch diameter openings) without gloves. The face velocity of the inward flow of air through the openings will increase to approximately 150' feet per minute.
c) With an installed front closure panel equipped with arm-length rubber gloves, and inlet air pressure relief for further protection. In this configuration, it is necessary to install a make-up air inlet fitted with a HEPA filter in the cabinet.

2. Class II - A ventilated cabinet for personnel and product protection having an open front with inward airflow for personnel protection (75' to 100' feet per minute), and HEPA filtered downward unidirectional airflow for product protection. The exhaust air is filtered through a HEPA filter for environmental protection. For selection and procurement of Class II cabinets refer to standards developed by the National Sanitation Foundation, Ann Arbor, Michigan. Cabinets are further classified as:

a) Type A - Suitable for microbiological research in the absence of volatile or toxic chemicals and radionuclides (BL-2 and BL-3), with 70% recirculated air through HEPA. They are exhausted through HEPA into the laboratory or to the outdoors via a "thimble" connection to the building exhaust system.
b) Type B - Hard ducted to the building exhaust system, contains negative pressure plena, and face velocity of 100' feet per minute. Type B cabinets are further sub-typed into types: B1 (30% recirculated air through HEPA; exhaust via HEPA and hard ducted. BL2 and BL-3), B2 (No recirculation; total exhaust via HEPA and hard ducted. BL-2 and BL-3), and B3 (same as IIA, but plena under negative pressure to room and exhaust air is ducted. BL-2 and BL-3).
Classes I and II should be located away from traffic patterns and doors, airflow from fans, room air supply louvers, and other air moving devices.

3. Class III - Closed-front ventilated cabinet of gas tight construction that provides the highest level of personnel protection from infectious aerosols, as well as protection of research materials from microbiological contaminants. The interior of the cabinet is protected from contaminants exterior to the cabinet. The cabinet is fitted with arm-length rubber gloves and is operated under negative pressure of at least 0.5 inches water gauge. All supply air is filtered through HEPA filters. Exhaust air is filtered through two HEPA filters in series or one HEPA filter and incinerator before being discharged to the outside environment. Class III cabinets are most suitable for work with hazardous agents that require Biosafety Level 3 or 4 containment. Cabinets must be connected to a double-door autoclave and/or chemical dunk tank used to sterilize or disinfect all materials exiting the cabinet, and to allow supplies to enter the cabinet.

 

Biologics
"Any virus, therapeutic serum, toxin, antitoxin, vaccine, blood, blood component or derivative, allergenic product, or analogous product… applicable to the prevention, treatment, or cure of diseases or injuries of man…"

Biomass
Organic matter grown by the photosynthetic conversion of solar energy.

Biomass
The entire assemblage of living organisms (both plant and animal), of a particular region, considered collectively.

Biometabolism
Physical and chemical processes that occur within a cell or an organism, for example, the conversion of nutrients into energy.

Biometrics
A method of verifying an individual's identity based on measurement of his/her physical feature(s) or repeatable action(s) where those features and/or actions are both measurable and unique to that individual. The main types of biometrics are: face recognition, finger scanning, hand geometry, finger geometry, iris recognition, palm, retina, signature, and voice recognition.

Bionics
An interscience discipline for constructing artificial systems, which resemble or have the characteristics of living systems.

Biopharmaceuticals
Ethical pharmaceutical drugs derived through bioprocessing.

Bioprocessing
The creation of a product utilizing a living organism.

Bioprocess Engineering
Process that uses complete living cells or their components (e.g., enzymes, chloroplast) to effect desired physical or chemical changes.

Biopsy
The gross and microscopic examination of tissues or cells removed from a living patient, for the purpose of diagnosis or prognosis of disease, or for the confirmation of normal conditions.

Biopure Water
Water that is sterile, pyrogen free and has a total solids content of less than 1 ppm.

Biosphere
All the living matter on or in the earth, the oceans and seas, and the atmosphere.

Bioreactor
A closed system used for bioprocessing (flask, roller bottle, tank, vessel, or other container), which supports the growth of cells, mammalian or bacterial, in a culture medium. A bacterial reaction usually is said to take place in a fermenter, and cell culture in a bioreactor.

Biosafety Level
The National Institutes of Health (NIH) specifies physical containment levels and defines Biosafety Levels in their "Guidelines for Research Involving Recombinant DNA Molecules" - Appendix G - May 1999. There are four biosafety levels for operations performed with infectious agents:

1. BL1: Practices, safety equipment, and facilities appropriate for work performed with defined and characterized strains of viable microorganisms not known to cause disease in healthy adult humans. The Basic Laboratory. This laboratory provides general space in which work is done with viable agents that are not associated with disease in healthy adults. Conventional laboratory designs are adequate. Areas known to be source of general contamination, such as animal rooms and waste staging areas, should not be adjacent to patient care activities. Public areas and general offices to which non-laboratory staff requires frequent access should be separated from spaces, that primarily support laboratory functions.
2. BL2: Practices, safety equipment, and facilities appropriate for work performed with a broad spectrum of moderate risk agents present and associated with human disease of varying severity. The Basic Laboratory. This laboratory provides general space in which work is done with viable agents that are not associated with disease in healthy adults. Conventional laboratory designs are adequate. Areas known to be sources of general contamination, such as animal rooms and waste staging areas, should not be adjacent to patient care activities. Public areas and general offices to which non-laboratory staff requires frequent access should be separated from spaces, which primarily support laboratory functions.
3. BL3: Practices, safety equipment, and facilities appropriate for work performed with indigenous or exotic agents where the potential for infection by aerosols is real and the disease may have serious or lethal consequences. Just walking through the area and breathing the air could infect one. The Containment Laboratory. This laboratory has special engineering features that make it possible for laboratory workers to handle hazardous materials without endangering themselves, the community, or the environment. The unique features that distinguish this laboratory from the basic laboratory are the provisions for access control and a specialized ventilation system. The containment laboratory may be an entire building, a single module, or complex of modules within a building. In all cases, a controlled access zone from areas open to the public separates the laboratory.
4. BL4: Practices, safety equipment, and facilities appropriate for work performed with dangerous and exotic agents that pose a high individual risk of life-threatening disease. Exposure to the skin could cause infection. The Maximum Containment Laboratory. This laboratory has special engineering and containment features that allow activities involving infectious agents that are extremely hazardous to the laboratory worker or that may cause serious epidemic disease to be conducted safely. Although the maximum containment laboratory is generally a separate building, it can be constructed as an isolated area within the building. The laboratory's distinguishing characteristic is that it has secondary barriers to prevent hazardous materials from escaping into the environment. Such barriers include sealed openings into the laboratory, airlocks or liquid disinfectant barriers, a clothing-change and shower room contiguous to the laboratory, a double door autoclave, a biowaste treatment system, and a treatment system to decontaminate exhaust air.

(also see: Good Large Scale Practice, Containment Level, and Table II, Section II - Comparison of Good Large Scale Practice (GLSP) and Biosafety Level (BL) - Large Scale (LS) Practice)
Biosynthesis
The production, by biological synthesis or degradation, of compounds by a living organism (e.g. amino acid synthesis, nucleotide synthesis).

Biotechnology
An industry that creates, develops, and markets a variety of techniques that use living organisms, or substances from those organisms, to make or modify a product by microbial and biochemical processes. A common misconception is that biotechnology refers only to recombinant DNA or gene splicing work. Recombinant DNA is only one of the many techniques used to derive products for organisms, plants, and parts of both for the biotechnology industry. A list of areas covered by the term biotechnology would more properly include: plant tissue culture, cell fusion techniques (especially for the production of monoclonal antibodies), enzyme systems, plant breeding, meristem culture, fermentation, and others.

Biotechnology
A process of applying genetic engineering (recombinant DNA), hybrid (monoclonal antibody), hybridization (gene probes), bioelectric, etc. to commercial applications in pharmaceutical, chemical, medical diagnostic device, food, animal and plant industries.

Biotechnology
Products Large molecules that are not manufactured by means of chemical synthesis but rather produced by means of fermentation and/or recovery, sourced from genetically engineered products.

Biowaste Inactivation
The inactivation or "killing" of biological organisms using heat or chemicals. This step is done at the end of the processing to ensure that there are no living organisms remaining in the effluent that is sent to the sanitary sewer system. Heat is usually applied at 130ºC (266ºF) for mammalian cells. Chemicals used include caustic or acid.

BLA (Biologics License Application)
The required application for marketing a biologic product in the United States. Most biopharmaceuticals are biologics.

Blank
A preliminary analysis omitting only the sample to provide an unbiased reference point or baseline for comparison. It is important to minimize extraneous contamination that could be confused with constituents in the sample itself.

Blind Weld
A "blind weld" is defined as a pipe or tube joint welded automatically in which there is no physical way to inspect the weld either visually or with a borescope.
Blinding Clinical trial technique in which, to eliminate bias in a research study, subjects and/or clinical investigators remain unaware of which investigational product is provided.
Blood-Borne Pathogens
Infectious microorganisms that are carried in the blood of infected humans or animals and that can be transmitted through contact with infected blood, body fluids, tissues, or organs. Blood-borne pathogens are implicated in diseases such as malaria, syphilis, brucellosis, tuberculosis, hepatitis B, and AIDS (Acquired Immunodeficiency Syndrome). Workplace transmission of a blood-borne pathogen can occur via accidental inoculation with a contaminated "sharp" exposure through open cuts, skin abrasions, and mucous membranes of eyes and mouth indirect transmission (e.g., touching mouth, eyes, nose or open cuts with contaminated hands).

Blood Corpuscle
A cell that circulates in the blood.

Blood Plasma
Blood from which all blood corpuscles, with the exception of platelet cells, have been removed (e.g. by centrifugation) resulting in a clear, straw-colored fluid, which clots as easily as whole blood.

Blood Platelets
Small, disc-shaped, metabolically active cells circulating in the blood. They are essential in the blood clotting process since they aggregate to form a plug on the injured surface of the blood vessel.

Blood Serum
The liquid expressed from clotted blood or clotted blood plasma.

Blowdown
The bleeding-off of fixed quantities of accumulated feed water to reduce concentrated impurities. If these impurities are permitted to accumulate, they may pass through the distillation process and contaminate the distillate or foul the distillation system.

Blowdown
The withdrawal of water from an evaporating water system to maintain a solids balance within specified limits of concentration of those solids.

Blow (Form) Fill, Seal
Refers to machines that combine formation of a plastic container by blow molding, aseptic filling of a liquid product and sealing of the final package. In the U.S., a major company is ALP, or Automatic Liquid Packaging (Weiler Engineering) and in Europe, Rommilog.

BME (Basic Medium Eagles)
One of the most common tissue culture media composed of isotonic salts, carbohydrates and vitamins. When combined with animal serum. BME is a good medium for cell proliferation.

BOD (Biochemical Oxygen Demand)
The amount of oxygen required to oxidize the dissolved organic matter in a water sample by aerobic (bacterial) decay. A measure of the oxygen depletion that would result from discharging organic impurities into a waterway.

BOD (Biological Oxygen Demand)
The oxygen used in meeting the metabolic needs of aerobic organisms in water containing organic compounds.
BPC (Bulk Pharmaceutical Chemical)
A pharmaceutical product derived by chemical synthesis, in bulk form, for later dispensing, formulation or compounding, and filling in a pharmaceutical finishing facility.
Breakthrough Passage of a substance through a bed, filter, or process designed to eliminate it. For ion exchange processes, the first signs are leakage of ions (in mixed beds, usually Silica) and the resultant increase in conductivity. For organic removal beds, usually small, volatile compounds (Trihalomethanes (THMs) are common in activated carbon).

BSE (Bovine Serum Albumin)
A blood protein that makes up approximately 55-65% of the proteins in the bovine serum. Used as a size marker on gels and as carrier protein.

BSE (Bovine Spongiform Encephalopathy)
Sometimes called "Mad Cow Disease". A disease of cattle presumably caused by a virus or other unidentified entity that affects the brain and causes the cow to behave erratically. Prevalent in parts of Europe but not in the United States. BSE is a contaminant that is undesirable in bovine sera. It is not known whether the causative agent can be filtered out since the causative agent itself is not known. In humans, it is believed to cause Creutzfeld-Jacob, a disease affecting the nervous system.

BVD (Bovine Viral Diarrhea)
Viral contaminant found in bovine sera. Able to be filtered out using 0.1 µm nylon filters.
Bovine Of, relating to, or from a cow: such as Bovine Blood: blood from a cow.
Braze Welding
A welding process using nonferrous filler metal that has a melting point below that of the base metals, but above 427ºC (800ºF). The filler metal is not distributed in the joint by capillary attraction. This type of welding has been also called Bronze welding, a misnomer.

Brazing
A metal joining process wherein coalescence is produced by use of a nonferrous filler metal having a melting point above 427ºC (800ºF), but lower than that of the base metals being joined. The filler metal is distributed between the closely fitted surfaces of the joint by capillary action.

Breakthrough
The first appearance in the effluent of an ion-exchange unit of unadsorbed components similar to those that deplete the activity of the resin bed. Breakthrough indicates that the resin is exhausted and needs to be regenerated.

Breath Control Shields
Typically made of acrylic or plastic materials, shields protect product, equipment, or the work from particulate contamination expelled by people.

Broad Spectrum
Over a wide range. A broad-spectrum disinfectant is effective against a wide range of microorganisms including bacterial spores, mycobacteria, non-lipid and lipid viruses, fungi, and vegetative bacteria.

Broth
The liquid culture medium in which fermentation or cell culture takes place.

Btu (British thermal unit)
The unit used to measure the amount of heat in a substance. One Btu is the heat required to produce a temperature rise of 1°F. in one lb. of water.

Bubble Point Test
A filter leakage test in which the filter is wetted and air pressure is applied and slowly increased until water is expelled from the largest pores and bubbles appear from a submerged tube in a downstream collection vessel. Vigorous bubbling, as opposed to a diffusional airflow or occasional bubbles, is indicative of reaching the bubble point. This visual test can be fairly accurate for low area filters, such as discs. When used to evaluate high area filters, it is subject to limitations in observation, test time, collection conditions, and pressurization rates. The bubble point test is not recommended for integrity testing of filter cartridges.

Buffer
A substance capable of neutralizing both acids and bases in solution, thereby maintaining the original acidity or causticity of the solution.

Buffer Prep
Area Section of most biotech facilities devoted to the preparation of controlled bioburden buffer solutions for use in the chromatographic separation area of those facilities.

Building Occupancy Classification (California Building Code)
Every building, whether existing or to be erected, is classified by the building official according to its use or the character of its occupancy. The occupancy groups are as follows:

1. Group A - Assembly (Section 303.1.1)
2. Group B - Business (Section 304.1)
3. Group C - Organized Camp (Section 431A)
4. Group E - Educational (Section 305.1)
5. Group F - Factory and Industrial (Section 306.1)
6. Group H - Hazardous (Section 307.1) (also see: Hazardous Occupancy - Group H)
7. Group I - Institutional (Section 308.1)
8. Group M - Mercantile (Section 309.1)
9. Group R - Residential (Section 310.1)
10. Group S - Storage (Section 311.1)
11. Group U - Utility (Section 312.1)

Bulk Handling
The transferring of flammable or combustible liquids from tanks or drums into smaller containers for distribution.

Bulk Oxygen System
An assembly of equipment, such as storage containers, pressure regulators, safety devices, vaporizers, manifolds, and interconnecting piping that has a storage capacity of more than 12,000 cubic feet (340 m³) of oxygen at normal temperature and pressure, connected in service or ready for service, or more than 25,000 cubic feet (708 m³) of oxygen, including unconnected reserve on hand at the site.

Bulk Pharmaceutical Chemical (BPC)
(also see: BPC (Bulk Pharmaceutical Chemical))

Byte
An abbreviation for binary term. A storage unit capable of holding eight bits or the space required for a single letter or number, a single character.

C

Calcium
A metallic dyad element of a lustrous yellow color, symbol Ca, atomic number 20, atomic weight 40.09, melting point 810°, often found in water usually as dissolved calcium carbonate, chalk (CaCO3). Soluble in water, it causes hardness and subsequent scaling.

Calcium Carbonate Equivalent
The value obtained when salts are calculated in terms of equivalent quantities of calcium carbonate. This is a convenient method of reducing all salts to a common basis for comparison.

ppm CaCO3 = ppm ion X
Equivalent weight of CaCO3
-------------------------------------
Equivalent weight of ion

Where ion = magnesium, calcium, or other elements that contribute to hardness.

Calibration
A comparison of a measurement standard or instrument of unknown accuracy to detect, correlate, report, or eliminate by adjustment of any variation in the accuracy of the unknown standard or instrument.

Calibration (ICH API defintion)
The demonstration that a particular instrument or device produces results within specified limits by comparison with those produced by a reference or traceable standard over an appropriate range of measurements.

Calorie
Any of several approximately equal units of heat, each measured as the quantity of heat required to raise the temperature of one (1) gram of water by °C from a standard initial temperature, specially from 3.98°C, 14.5°C, or 19.5°C, at a constant pressure of one (1) atmosphere. Also called "gram calorie", "small calorie".
The unit of heat equal to 1/100 the quantity of heat required to raise the temperature of one (1) gram of water from 0°C to 100°C at one (10 atmosphere pressure. Also called "mean calorie".
The unit required to raise the temperature of one (1) Kilogram of water by 1°C at one (1) atmosphere pressure. Also called "kilogram calorie", "large calorie".

Calorimetry
Analytical method that measures heat loss or gain resulting from physical or chemical changes in a sample. Differential scanning calorimetry compares the results of heating a sample to those for heating a reference material. For example, a method to measure the temperature at which the sample crystallizes, changes phases, or decomposes.

Cancer
The name given to a group of diseases that are characterized by uncontrolled cellular growth.

Capsid
The external protein shell or coat of a virus particle.

Carbohydrates
A large class of carbon-hydrogen-oxygen compounds that includes the sugars and their polymers (mainly starch, glycogen and cellulose). Most carbohydrates are produced by photosynthesis in plants. They are the major food compounds for both plants and animals. One group of carbohydrates, cellulose, is the primary structural material of plants.

Carbon Filter
A vessel loaded with activated carbon and used to remove organics, chlorine, tastes, and odors from liquids, operating on the principle of adsorption.

Carbon Thickness
A measurement of surface organic material. Carbon thickness values typically range from 5 to 20 angstroms (Å). Significantly contaminated surfaces can show surface carbon thickness of 20 angstroms (Å) or more.

Carbonate Hardness
That hardness in water caused by bicarbonates and carbonates of calcium and magnesium. If alkalinity exceeds total hardness, all hardness is carbonate hardness; if hardness exceeds alkalinity, the carbonate hardness equals the alkalinity.

Carcinogen
A substance that causes the development of cancerous growths in living tissue. A chemical is considered to be a carcinogen if it has been evaluated by the International Agency for Cancer Research (IARC) and found to be a carcinogen or potential carcinogen, or if it is listed in the Annual Report on Carcinogens published by the National Toxicology Program, or if it is regulated by OSHA as a carcinogen.

Carcinogenic
Cancer-causing. Many agents that are carcinogenic are mutagens.

Carrier
A person who has a recessive mutated gene, together with its normal allele. Carriers do not usually develop disease but can pass the mutated gene on to their children.

Catabolism
The intracellular phase of metabolism involved in the energy-yielding degradation of nutrient molecules (for example, glucose to CO2 and H2O). Waste products are called catabolites.

Catalase
An enzyme that catalyzes the decomposition of hydrogen peroxide and molecular oxygen and water.

Catalyst
A compound that increases the rate of a chemical reaction without being consumed or changed. In the biosciences, the term enzyme is used. Enzymes catalyze biological reactions.

Cation
A positively charged particle or ion.

Cation Exchange
The displacement of one positively charged particle by another on a cation-exchange material.

Cation Exchange Resin
An Ion exchange resin, which removes positively charged ions (cations) by exchanging them for hydrogen ions.

Cavitation
A condition of liquid flow where, after partial vaporization of the liquid, the subsequent collapse of vapor bubbles can produce surface damage.

CBER
(also see: center for Biologics Evaluation and Research)

Center For Biologics Evaluation and Research (CBER)
The FDA successor to the Bureau of Biologics concerned with biologic drugs, and most importantly, with the new protein and peptide drugs emanating from biotechnology.

Center For Drug Evaluation and Research (CDER)
The successor to the Bureau of Drugs of the FDA concerned with all SVPs (Small Volume Parenterals), LVPs (Large Volume Parenterals), and non-biological drugs.

Certified Vendor Drawings
Drawings prepared by vendors for the fabrication of equipment, specialty components and skid mounted systems. These are certified as fabricated by the vendor and become the official document for the equipment involved.

Celsius
Of or pertaining to a temperature scale that registers the freezing point of water as 0°C and the boiling point as 100°C under normal atmospheric pressure. Also called "centigrade". The designation Celsius has been official since 1948, but centigrade remains in common use.

Cell
The fundamental unit of life. The living tissue of almost every organism is composed of these fundamental living units. Unicellular organisms, such as yeast or a bacterium, perform all life functions within the one cell. In a higher organism, a multicellular organism, entire populations of cells may be designated a particular task. The cells of muscle tissue, for example, are specialized for movement.

Cell Bank
Master Cell Bank: The bank of cells, which contain the original unused mutated cells from which, the Manufacturing Working Cell Bank is taken. This is usually kept under lock with very limited access.
Manufacturing Working Cell Bank: The bank of cells derived from the Master Cell Bank, which are used to seed the fermentation manufacturing process.
Cell Culture
The in vitro propagation of cells removed from organisms in a laboratory environment that has strict sterility, temperature, and nutrient requirement; also used to refer to any particular individual sample. Usually, cell culture takes place in a bioreactor.

Cell Differentiation
The process whereby descendants of a common parental cell achieve and maintain specialization of structure and function. Muscle cells become muscle cells and bone cells develop. In humans all the different types of cells differentiate from the simple sperm and egg.

Cell Fusion
The fusing together of two or more cells to become a single cell. This technique has had important consequences in immunology, developmental biology, and genetics. For example, monoclonal antibodies are produced by fusing a spleen cell (producing an antibody specific for the antigen of interest) with a mouse myeloma cell to produce a hybridoma which has an indefinitely long life because of the myeloma component and which secretes a specific antibody. When a human cell is fused with a mouse cell, the human chromosomes are progressively lost from the resultant hybrid and by correlating the presence of proteins in the hybrid with the presence of particular human chromosomes, genes can be assigned to individual chromosomes.

Cell Lines
When cells from the first culture (taken from the organism) are used to make subsequent cultures, a cell line is established. "Immortal" cell lines can replicate indefinitely.

Cellulose
A polymer of six-carbon sugars found in all plant matter, the most abundant biological compound on earth.

Centimorgan (cM)
A unit of measure of recombination frequency. One centimorgan is equal to a 1% chance that a marker at one genetic locus will be separated from a marker at a second locus due to crossing over in a single generation. In human beings, one centimorgan is equivalent, on average, to one million base pairs.

Centrifugation
Mechanical means of separation based on differences in sedimentation rates due to differences in density between the suspended particles in the liquid.

Centrifuge
A centrifuge operates on the principle of centrifugal force, the inertial reaction by which a body tends to move away from a center about which it revolves. This technique is commonly used to separate solids from liquids or liquids of different densities. Centrifugal equipment is divided into two major types, sedimenters and filters:

Sedimenters
For sedimentation, batch and continuous centrifuges are available. There are three types of centrifuges for continuous sedimentation.

a) Disc - constructed on the vertical axis, disc centrifuges are solid-bowl units. All are capable of separating liquids from solids, solids from two immiscible liquids and two immiscible liquids. Disc-stack centrifuges differ in their ability to handle different volumes of solids in the feed stream, and in the way that the separated solids are removed from the separation vessel: solids-retaining, solids-ejecting, and nozzle-bowl separators.
b) Decanters - consists of a cylindrical settling section with a tapered end. Inside the bowl is a scroll conveyor that is driven usually at a slightly faster rate than the bowl and can be controlled by a differential speed device or back drive.
c) Tubular - a vertical solid-wall cylinder provided with caps on both ends; a tubular centrifuge generally has a bottom feed inlet. When two liquids of different specific gravities are fed, the heavier phase is concentrated against the wall, while the lighter phase "floats" on the heavier phase.

Filters

Filtering centrifuges accommodate a range of liquid-solid separations. The two batch types, basket and peeler centrifuges, can separate almost any liquid-solid slurry. For continuous operation, there are pusher and conical centrifuges.

a) Pusher - with a horizontal axis, the pusher centrifuge operates at a constant fixed speed. It has a perforated bowl, generally with a bar-type screen. One end of the bowl is open while the opposite end is closed with a reciprocating diaphragm, or disc, which rotates with the bowl.
b) Conical - the standard conical centrifuge consists of a cone with a small closed end and a large open end to which is attached a coarsely woven drainage screen, topped with a filter screen or perforated plate. A compartmentalized casing surrounds the bowl. There are two variations of the basic conical centrifuge: the tilting conical centrifuge and the conveyor conical type.

Centromere
A specialized chromosome region to which mitotic or meiotic spindle fibers attach during cell division.

Certification
Documented testimony by qualified authorities that a system qualification, calibration, validation, or revalidation has been performed appropriately and that the results are acceptable. Personnel certification is proof that a person has achieved a certain level of qualification.

CFR (Code of Federal regulations) Title 21
The U.S. regulations that directly apply to biopharmaceutical development are contained in Title 21 parts 58 (Good Laboratory Practice for Nonclinical Laboratory Studies), 210 (Current Good Manufacturing Practice in Manufacturing, Processing, Packing, or Holding of Drugs; General), 211 (Current Good Manufacturing Practice for Finished Pharmaceuticals), and 600 (Biological Products: General).
Parts 50 (Protection of Human Subjects), 56 (Institutional Review Boards), and 312 (Investigational New Drugs) apply to critical trials.
Part 11 provides criteria which will consider electronic records to be equivalent to paper records and electronic signatures to be equivalent to traditional handwritten signatures. (also see: cGMPs (current Good Manufacturing Practices))

CFU (Colony Forming Unit)
A measure of the number of bacteria present in the environment or on the surfaces of an aseptic processing room, measured as part of qualification and ongoing monitoring. Also applied to the testing of purified water samples.

cGMPs (current Good Manufacturing Practices)
Current accepted standards of design, operation, practice, and sanitization. The FDA is empowered to inspect drug-manufacturing plants in which drugs are processed, manufactured, packaged, and stored for compliance with these standards.

Change Control
A formal system by which qualified representatives of appropriate disciplines review proposed or actual changes that might affect a validated process's status. The intent is to determine the need for action that would ensure that the system is maintained in a validated state.

Change Over
The program by which a processing area is cleared of supplies and components used in the manufacture of a previous product and then readied for production of a new product. This often includes parts change over and/or special cleaning to eliminate cross-contamination.

Channeling
Cleavage, cracking, and furrowing of a resin bed due to resin age, a change in one of the feed solutions, or faulty operational procedures. The solution being treated follows the path of least resistance, runs through these furrows, and fails to contact active resin material in other parts of the bed.

Characterization
Precisely deciphering and describing all the characteristics of a drug substance that affect its efficacy and its purity. Or the chemical, physical, and sometimes biological properties that are attributes of a specific drug substance.

Checksum
A record of the number of bits transmitted and included with the transmission so that the receiving program can check to see whether the same number of bits arrived. If the counts match, it is assumed that the complete transmission was received.

Chelating Agents
Organic compounds that can withdraw ions from solution, forming insoluble complexes.

Chemoautotrophs
Facultative autotrophs that obtain their energy from the oxidation of inorganic compounds.

Chemostat
A growth chamber that keeps a bacterial culture at a specific volume and rate of growth by limiting nutrient medium and removing spent culture.

Chemotherapy
Treatment of disease by means of chemical substances or drugs.

Chimeric
An organism, especially a plant, containing tissues from at least two genetically distinct parents. Type of antibody, partially human and partially mouse.

Chloramine
A chlorine compound formed by reaction with organic amines or ammonia.

Chlorinated Vinyls
Thermoplastic chlorinated vinyls include PVC, CPVC, and VDC. PVC and CPVC are very similar materials, the primary difference being the addition of more chlorine to the PVC molecule to synthesize CPVC. This results in a higher glass transition temperature that equates to a higher use temperature for CPVC. The polymerization with chlorine also makes these materials inherently flame resistant. In addition to being resistant to higher temperatures, CPVC is more resistant to process chemicals.

Chlorination
Adding chlorine or chlorine compounds to water for disinfection.

Chlorine
An element used to kill microorganisms in water. At room temperature and atmospheric pressure a greenish yellow gas.

Chlorine Demand
Amount of chlorine used up by reacting with oxidizable substances in water before chlorine residual can be measured.

Chlorine Residual
Portion of free or combined chlorine that remains active after specified contact period.

Chloroplasts
Relatively large, chlorophyll containing, green organelles responsible for photosynthesis in photosynthetic eukaryotes, such as algae and plant cells. Every chloroplast contains an outer membrane and a large number of inner membranes called thylakoids.

CHO (Chinese Hamster Ovary) Cells
In cell culture, the cells of a female hamster's reproductive organs, which historically have proven to be excellent expression systems in analytical studies and for producing pharmaceutical proteins.

Chromatids
Copies of a chromosome produced by replication.

Chromatin
The complex of DNA and protein in the nucleus of the interphase cell, originally recognized by its reaction with stains specific for DNA.

Chromatography
Procedure by which solutes (e.g., proteins and other chemical products) are selectively separated by a dynamic differential migration process in a system consisting of two or more phases, one of which moves continuously in a given direction and in which the individual substances exhibit different mobilities by reason of differences in adsorption, partition, solubility, vapor pressure, molecular size, or ionic charge density. The individual substances thus obtained can be identified or determined by analytical methods. There are several types of chromatography in use with different operating principles:

1. Adsorption - separates products by their different affinities for the surface of a solid medium, either an inorganic carrier such as silica gel, alumina, or hydroxyapatite, or an organic polymer.
2. Ion Exchange - uses ion exchange resin to which ionized functional groups have been attached. At an appropriate pH, target proteins acquire a net surface charge that allows them to selectively bind to an ion exchange resin. Other impurities are eluted through the column.
3. Gel Filtration - employs a neutral cross-linked carrier with a defined pore size for molecular fractionation. Molecules larger than the largest pores cannot enter the matrix and pass directly through the column; smaller molecules enter the carrier and are retarded. Gel filtration thus separates on the basis of molecular size, eluting larger molecules first, followed by progressively smaller species.
4. Affinity - relies on the propensity of each biomolecule to have an affinity for another highly specific biomolecule, such as an antibody-antigen relationship. Once bound together, the drug molecules can be detached by altering various chemical attributes in the column.
5. Hydrophobic - separates by molecule polarity and reverse interaction with water.
6. High Pressure Liquid Chromatography (HPLC)-

Chromium Enrichment Layer Thickness
In stainless steel, the same as its maximum depth of enrichment, unless a surface iron layer is present in which case the chromium enrichment layer is calculated as the maximum depth of enrichment minus the thickness of the surface iron oxide layer.

Chromosome
The self-replicating genetic structure of cells containing the cellular DNA that bears in its nucleotide sequence the linear array of genes. In prokaryotes, chromosomal DNA is circular, and the entire genome is carried on one chromosome. Eukaryotic genomes consist of a number of chromosomes whose DNA is associated with different kind of proteins.

CIP (Clean In Place)
Internally cleaning a piece of equipment without relocation or disassembly. The equipment is cleaned but not necessarily sterilized. The cleaning is normally done by acid, caustic, or a combination of both, with WFI rinse. The design of a CIP system should considered the operating volume design for the water consumption, chemical and biowaste effluent, and energy required to clean a given circuit or piece of equipment.

Class 100
Classification of an aseptic processing area where particle count should not exceed 100 particles (3,530 particles per cubic meter) 0.5µm or larger, per cubic foot of air, and no more than 0.1 CFU (Colony Forming Units) per cubic foot. Target uniform air velocity is 90 fpm plus or minus 20%, HEPA filtered air. (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Class 1,000
Classification of an area where particle count should not exceed 1,000 particles (35,300 particles per cubic meter) 0.5µm or larger, per cubic foot of air. Supplied by HEPA filtered air. Class 1,000 is not a pharmaceutical GMP expectation. (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Class 10,000
Classification of an area where particle count should not exceed 10,000 particles (353,000 particles per cubic meter) 0.5µm or larger, per cubic foot of air. Minimum of 20 air changes per hour, HEPA filtered air. (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Class 100,000
Classification of an area where particle count should not exceed 100,000 particles (3,530,000 particles per cubic meter) 0.5µm or larger, per cubic foot of air, and no more than 2.5 CFU (Colony Forming Units) per cubic foot. Minimum of 20 air changes per hour of HEPA filtered air. (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Class Name
"For naming and describing the classes, SI names and units are preferred; however, English (U.S. customary) units may be used". Federal Standard 209E superseded by ISO 14644-1). (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Class 95% ASHRAE Area
This area designation refers to the efficiency of the filters based on ASHRAE standard 52-76. These areas would have 95% efficient supply air filtration, unlike classified areas, which would have HEPA filtration. This classification is not specified in Federal Standard 209E or ISO 14644-1.

Class 65% ASHRAE Area
This area would have 65% efficient filtration. This classification is not specified in Federal Standard 209E or ISO 14644-1.

Class 30% ASHRAE Area
This area would have 30% efficient filtration. This classification is not specified in Federal Standard 209E or ISO 14644-1.

Classical Pharmaceuticals
Small-molecule, nonbiotech drugs produced by chemical synthesis.

Classification
The level (or the process of specifying or determining the level) of airborne particulate cleanliness applicable to a cleanroom or clean zone, expressed in terms of an ISO Class N, which represents maximum allowable concentrations (in particles per cubic meter of air) for considered sizes of particles. ISO 14644-1 (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Classified Space
A space in which the number of airborne particles is limited. This is accomplished by the strict use of HVAC systems. Areas are classified as Class 10, Class 100, Class 1,000, Class 10,000, and Class 100,000. In pharmaceutical production, only classes 100, 10,000, and 100,000 are used. (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Clean Air Device
Stand-alone equipment for treating and distributing clean air to achieve defined environmental conditions.

Clean Air Projector
Fan and filter unit used to locally clean room air and deliver it to a desired location. Often called a fan/filter unit.

Clean Area
An area where particulate and microbial levels are specified (e.g., Filling Room - Class 10,000 "In Operation")

Clean In Place (CIP)
(also see: CIP (Clean In Place))

Cleanroom
A specially constructed space environmentally controlled with respect to airborne particles (size and count), temperature, humidity, air pressure, airflow patterns, air motion, and lighting. ISO 14644-1 defines it as "a room in which the concentration of airborne particles is controlled, and which is constructed and used in a manner to minimize the introduction, generation, and retention of particles inside the room, and in which other relevant parameters, e.g. temperature, humidity, and pressure, are controlled as necessary." (also see Table I, Section II - Comparison of Airborne Particulate Cleanliness Classes)

Cleanroom Classification
The maximum number of particles greater than or equal to 0.5µm in diameter that may be present in a cubic foot of room air.

Clean Space
A room or volume controlled to meet a certain airborne particulate limit (Class or Grade). In pharmaceutical facilities, clean spaces are usually classified and controlled only for aseptic processing facilities, but may also be defined for certain biotech processes. Final non-sterile bulk facilities, oral product, most topical product manufacturing facilities, and warehouses are normally not classified as clean spaces.

Clean Steam
Steam free from boiler additives that may be purified, filtered, or separated. When condensed, clean steam meets the specification for WFI. Usually utilized to sterilize process equipment.

Clean Zone
ISO 14644-1 defines it as "a dedicated space in which the concentration of airborne particles is controlled, and which is constructed and used in a manner to minimize the introduction, generation, and retention of particles inside the zone and in which other relevant parameters, e.g. temperature, humidity, and pressure, are controlled as necessary". Additionally, ISO 14644-1 states, "this zone may be open or enclosed and may or may not be located within a cleanroom".

Cleavage
The splitting up of a complex molecule into two or more simpler molecules. The series of cell divisions occurring in the ovum immediately following its fertilization.

Clinical Endpoint
An indicator (such as blood pressure) measured in a human subject to asses the safety, efficacy, or other objective of a clinical trial.

Clinical Hold
The temporary cessation of a clinical trial by FDA if the agency is concerned about a drug or study protocol. The trial may resume when the problem is solved.

Clinical Trials
Testing of INDs (Investigational New Drugs) in human subjects to prove safety and efficacy prior to the drug's approval for marketing. The investigation of a previously untested drug is generally divided into three phases:

1. Phase I: Introducing the product (or drug) into a small number, generally 20 to 80, patients or healthy volunteers to determine the drug's metabolism, pharmacological actions, and side effects associated with increasing doses.
2. Phase II: introducing the product (or drug) into a small number, generally no more than several hundred, patients with the disease or condition under study to evaluate the effectiveness of the drug, common short-term side effects and risks associated with its use.
3. Phase III: Introducing the product (or drug) into several hundred to several thousand subjects. Studies are expanded controlled and uncontrolled trials performed after preliminary evidence suggesting effectiveness of the drug has been obtained. If the results of the Phase III Clinical Trials are favorable, then the FDA will normally license the drug for manufacture and sale. This phase is usually performed using double blind studies with a placebo and the actual drug.
4. Phase IV: Ongoing testing studies conducted after the drug is approved. This is done to ensure the long-term efficacy of the drug, detect any long-term beneficial and/or detrimental side effects, and to determine additional potential uses for the drug

Clone
A population of genetically identical cells derived from the multiplication of a single cell. It is the basis of rDNA and monoclonal antibody production.

Clone
A group of individuals produced from one individual through asexual processes that do not involve the interchange or combination of genetic material. As a result, members of a clone have identical genetic compositions. Protozoa and bacteria, for example, frequently reproduce asexually by a process called binary fission. In binary fission, a single-celled organism undergoes cell division and the result is two cells with identical genetic composition. Next, these two identical cells undergo division and the result is four cells with identical genetic composition. These identical offspring are all members of a clone.

Cloning
Using specialized DNA technology (also see: Cloning Vector) to produce multiple, exact copies of a single gene or other segment of DNA to obtain enough material for further study. This process is used by researchers in the Human Genome Project, and is referred to as cloning DNA. The resulting cloned (copied) collections of DNA molecules are called clone libraries. A second type of cloning exploits the natural process of cell division to make many copies of an entire cell. The genetic makeup of these cloned cells, called a cell line, is identical to the original cell. A third type of cloning produces complete, genetically identical animals such as the famous Scottish sheep, Dolly.

Cloning Vector
DNA molecule originating from a virus, a plasmid, or the cell of a higher organism into which another DNA fragment of appropriate size can be integrated without loss of the vectors capacity for self-replication; vectors introduce foreign DNA into host cells, where it can be reproduced in large quantities. Examples are plasmids, cosmids, and yeast artificial chromosomes; vectors are often recombinant molecules containing DNA sequences from several sources.

Closed System
One in which by its design and proper operation, prevents release of a microbiological agent or eukaryotic cell contained therein.

Closed System
System sterilized-in-place or sterilized while closed prior to use, is pressure or vacuum tight to some predefined leak rate, can be utilized for its intended purpose without breach to the integrity of the system, can be adapted for fluid transfers in or out while maintaining asepsis, and is connectable to other closed systems while maintaining integrity of all closed systems. (From PDA TR-28 for sterile product manufacture)

Clostridium
A genus of bacteria, most are obligate anaerobes and form endospores.

cM
(also see: Centimorgan)

Coagulation
Adding insoluble compounds to water to neutralize the electrical charge on colloids, causing them to coalesce to form larger particles that can be removed by settling.

Coaguligand
A VTA (Vascular Targeting Agent) that utilizes a human coagulation protein to induce tumor blood vessel clotting.

Coccus
A bacterium of round, spheroidal, or ovoid form, including micrococcus, staphylococcus, streptococcus, and pneumococcus.

COD (Chemical Oxygen Demand)
The amount of oxygen needed to completely oxidize all oxidizable organic and inorganic substances in water.

Coding Sequence
The region of a gene (DNA) that encodes the amino acid sequence of a protein.

Coenzyme
A non-polypeptide molecule required for the action of certain enzymes; often contains a vitamin as a component.
Cofactor
Small molecular weight, heat stable inorganic or organic substance required for the action of an enzyme.

Coliform Bacteria
A group of bacteria found in mammalian intestines and soil, used as a measure of fecal pollution in water. They are easy to identify and count in the laboratory because of their ability to ferment lactose.

Colonoscopy
Examination of the colon through a flexible, lighted instrument called a colonoscope.

Colony
A growth of microorganisms on a solid medium. The growth is visible without magnification.

Collagen
An albuminoid present in connective tissue, bone (ossein), and cartilage (chondrin), notable for its high content of the imino acids proline and hydroproxilone. On boiling with water it is converted into gelatin.

Collateral Targeting
The therapeutic strategy of targeting structures and cell types other than cancer cells common to all solid tumors as a means to attack a solid tumor.

Colloid
A translucent, yellowish material of the consistency of glue, less fluid than mucoid or mucinoid, found in the cells and tissues in a state of colloid degeneration or colloid carcinoma.
A substance, such as gelatin or cytoplasm that because of the size of its molecules, is slowly diffusible rather than soluble in water and is incapable of passing through an animal membrane.

Colloids
Particles so fine they will not settle without prior coagulation. They range from 10 Å to 1,000 Å (Angstroms). They have a net negative charge and readily clog membranes and foul resin beds. Examples are bacteria, silica, and clay.

CMC (Chemistry, Manufacturing, and Controls)
The section on a BLA (Biologics License Application) or IND (Investigational New Drug) describing the composition, manufacture, and specifications of a drug product and its ingredients.

Combustible Dust
Any finely divided solid material that is 420µ or 0.017 inches or less in diameter, or any material capable of passing through an US No. 40 standard sieve that when dispersed in air in the proper proportions, could be ignited by a flame, spark or other source of ignition.

Combustible Liquid
A liquid having a closed cup flash point at or above 100°F (37.8°C). Combustible liquids do not include compressed gases or cryogenic fluids. Combustible liquids are subdivided as follows:

1. Class II - Liquids having a closed cup flash point at or above 100°F (37.8°C) and below 140°F (60°C)
2. Class III-A - liquids having a closed cup flash point at or above 140°F (60°C) and below 200°F (93.3°C)
Class III-B - liquids having a closed cup flash point at or above 200°F (93.3°C).

Commissioning
A prescribed number of activities designed to take equipment and systems from static, substantially complete state to an operable state.

Commissioning
The documented process, verifying that equipment and systems are installed according to specifications, placing the equipment and systems into active service and verifying its proper operation. Commissioning is done for good business, but can include many Qualification activities.

Complementary DNA (cDNA)
DNA that is synthesized from a messenger RNA template; the single-stranded form is often used as a probe in physical mapping.

Complementary Sequence
Nucleic acid base sequence that can form a doublestranded structure by matching base pairs with another sequence; the complementary sequence to GTAC is CATG.

Compounding
The bringing together of excipient and solvent components into a homogeneous mix of active ingredients.

Compressed Gas
A material, or mixture of materials that are either liquefied, nonliquefied, or in solution having a boiling point of 68°F (20°C) or less at 14.7 psia (101.3 kPa) of pressure. The exceptions to this rule are those gases that have no health or physical hazard properties. These gases are not considered compressed until the pressure in their packaging exceeds 41 psia (282.5 kPa) at 68°F (20°C).

Computer Controlled System
Computer system plus its controlled function.

Computer Related System
Computerized system plus its operating environment.

Computer System
A group of hardware components and associated software designed and assembled to perform a specific function or group of functions.

Computerized System
A process or operation integrated with a computer system.

Concavity (welding)
A condition in which the surface of a welded joint is depressed relative to the surface of the tube or pipe. Concavity is measured as a maximum distance from the outside or the inside diameter surface of a welded joint along a line perpendicular to a line joining the weld toes.

Concentration Polarization
The phenomenon in ultrafiltration (UF) in which solutes form a dense, polarized layer next to the membrane surface eventually blocking further flow. UF systems counteract this by continuously flushing the solute away from the membrane surface.

Concurrent Process Validation
Establishing documented evidence that a process does what it purports to do based on information generated during actual implementation of the process.

Condensate
Distillate just after it has been cooled from steam into the liquid state.

Condenser
The heat exchanger used in distillation to cool steam in order to convert it from the vapor to the liquid state.

Conductivity
The reciprocal of resistivity (C=1/R). A measure of the ability to conduct an electric current. Since ionized impurities increase the conductivity of water, it is also an accurate measure of ionic purity. Conductivity is normally expressed in micromhos/cm (µmho/cm) or microsiemens/cm (µS/cm). To measure it, current is passed between two electrodes a fixed distance apart.

Configurable Software
Commercial, off-the-shelf software that can be configured to specific user applications without altering the basic program.

Configuration
The three-dimensional shape or form of a macromolecule.

Conformation
The characteristic three-dimensional shape (tertiary structure) of a macromolecule.

Conjugated Protein
A protein containing a metal or an organic prosthetic group or both. Hemoglobin is a conjugated protein.

Consent Decree
The result of a serious violation of federal regulations and related safety and quality standards. A company must agree to a series of measures aimed at bringing its manufacturing standards in compliance with federal regulations. Until agreed-upon conditions are met, a company may be forbidden to distribute its products in interstate commerce, except for those products deemed essential for the public health.

Conserved Sequence
A base sequence in a DNA molecule (or an amino acid sequence in a protein) that has remained essentially unchanged throughout evolution.

Containment
The action of confining within a defined space a microbiological agent or other entity that is being cultured, stored, manipulated, transported, or destroyed in order to prevent or limit its contact with people and/or the environment. Methods to achieve containment include physical and biological barriers and inactivation using physical or chemical means.

1. Primary Containment. Addresses the protection of personnel and the immediate laboratory environment from exposure to infectious agents. It involves the use of closed containers or safety biological cabinets along with secure operating procedures.
2. Secondary Containment. A system of containment that prevents the escape of infectious agents into the environment external to the laboratory. It involves the use of rooms with specially designed air handling, the existence of airlocks and/or sterilizers for the exit of materials and secure operating procedures. In many cases it may add to the effectiveness of primary containment.

1. Appendix G - Physical Containment specifies physical containment for standard laboratory experiments and defines Biosafety Level 1 (BL1) through Biosafety Level 4 (BL4). (also see: Biosafety Level, and Table II - Section II - Comparison of Good Large Scale Practice (GLSP) and Biosafety Level (BL) - Large Scale (LS) Practice)
2. Appendix I - Biological Containment specifies levels of biological containment (host vector systems) for prokaryotes and defines Host Vector 1 Systems (HV1) and Host Vector 2 Systems (HV2). (also see: Host Vector (HV) System)
3. Appendix K - Physical Containment for Large Scale Uses of Organisms Containing Recombinant DNA Molecules specifies physical containment guidelines for large scale (over 10 liters) research or production involving viable organisms containing recombinant DNA molecules, and defines GLSP (Good Large Scale Practice) through Biosafety Level 3-LS (Large Scale). (also see: Biosafety Level, and Table II - Section II - Comparison of Good Large Scale Practice (GLSP) and Biosafety Level (BL) - Large Scale (LS) Practice)
4. Appendix P - Physical and Biological Containment for Recombinant DNA Research Involving Plants specifies physical and biological containment conditions and practices suitable to the greenhouse conduct of experiments involving recombinant DNA-containing plants, plant-associated microorganisms, and small animals, and defines Biosafety Level 1-Plants (BL1-P) through Biosafety Level 4-Plants (BL4-P).
5. Appendix Q - Physical and Biological Containment for Recombinant DNA Research Involving Animals specifies containment and confinement practices for research involving whole animals, both those in which the animal's genome has been altered by stable introduction of recombinant DNA, and experiments involving viable recombinant DNA-modified microorganisms tested on whole animals, and defines Biosafety Level 1-Animals (BL1-N) through Biosafety Level 4-Animals (BL4-N).

Contaminant
Any unwanted or undesired component in a process fluid or controlled environment.

Contamination
The undesired introduction of impurities of a chemical or microbiological nature, or of foreign matter, into or onto a raw material, intermediate, or API (Active Pharmaceutical Ingredient) during production, sampling, packaging or repackaging, storage or transport.

Contig
Group of cloned (copied) pieces of DNA representing overlapping regions of a particular chromosome.

Contig Map
A map depicting the relative order of a linked library of small overlapping clones representing a complete chromosomal segment.

Continuous Fermentation
A process in which sterile medium is added without interruption to the fermentation system with a balancing withdrawal (or "harvesting") of broth for product extraction. The length of fermentation can be measured in weeks or months. Commercial applications of continuous fermentation are limited in number, with ethanol production by yeast the most important example.

Contract Manufacturer
A company holding an agreement requiring the performance of some aspect of API manufacturing

Control Area
A building or portion of a building within which the exempted amounts of hazardous materials may be stored, dispensed, handled, or used.

Control Group
The group of subjects in a controlled study that receives no treatment, receives a standard treatment, or receives a placebo.


Control Parameters

Those operating variables that can be assigned values and are used as control levels.

Control Serum
Serum used as a standard for clinical chemistry lab tests. Most often produced from outdated whole blood plasma. Most often turbid and difficult to filter

Controlled Area
An area constructed and operated in such a manner that some attempt is made to control the introduction of potential contamination, and the consequences of accidental release of living organisms. The level of control exercised should reflect the nature of the organism employed in the process. At a minimum, the area should be maintained at a pressure negative to the immediate external environment and allow for the efficient removal of small quantities of airborne contaminants.

Controlled Area
Area of restricted access. A term for areas and rooms adjoining a critical area in aseptic production facilities.

Conventional Drugs
New compounds made up by chemical synthesis or fermentation. These are termed by the FDA as NCEs (New Chemical Entities). The FDA rates conventional drugs with important therapeutic gain as 1-A drugs, for priority review. For example, AIDS drugs are conventional drugs approved for AIDS or AIDS-associated conditions.

Conventional Flow Cleanroom
A room supplied with filtered air with no specified requirement for uniform airflow patterns or velocity. Airflow patterns are usually turbulent.

Converted Data
Any original data that has been entered into a user-developed application (spreadsheet, database, report, etc.) for manipulation, evaluation, or review.

Convexity
A condition in which the surface of a welded joint is extended relative to the surface of the tube or pipe. Convexity is measured as a maximum distance from the outside or inside diameter surface of a welded joint along a line perpendicular to a line joining the weld toes.

Corn Steep Liquor
An ingredient in the culture medium for producing penicillin. A natural nitrogenous material that is a by-product of the corn milling industry.

Corrosive
A chemical that causes visible destruction or irreversible alterations in living tissue by chemical action at the site of contact. A chemical is considered corrosive if, when tested on the intact skin of albino rabbits by the method described in Appendix A of CFR 49 Part 173, it destroys or changes irreversibly the structure of the tissue at the site of contact following an exposure period of four hours. This term shall not refer to action on inanimate surfaces.

Corrosive Liquid
A liquid which when in contact with living tissue, will cause destruction or irreversible alteration of such tissue by chemical action. Examples include acidic, alkaline, or caustic materials.

Cosmid
Artificially constructed cloning vector containing the cos gene of phage lambda. Cosmids can be packaged in lambda p0hage particles for infection into E. coli: this permits cloning of larger DNA fragments (up to 45kb) that can be introduced into bacterial hosts in plasmid vectors.

CP (Cyclic Polarization)
An electrochemical test (ASTM G61) for metals that measures the point at which pitting corrosion begins. CP uses an electrolytic cell to directly measure the corrosion rate. By using the test piece as the working electrode, initiation of localized corrosion is shown by the potential at which the current density increases rapidly. This point is called the "pitting potential". The lower the current density at this point, the more resistance to pitting corrosion. The current density is measured in micro-amps per square centimeter.

Critical
A material, process step, or process condition, test requirement, or any other relevant parameter is considered critical when non-compliance with predetermined criteria directly influences the quality attributes of the API (Active Pharmaceutical Ingredient) in a detrimental manner.

Critical Area
An area where (sterile) product or contact surface is exposed, normally Class 100 (e.g., Point of Fill).

Critical Device
A device that directly ensures that a GMP Critical Parameter is maintained within predetermined limits (e.g., terminal HEPA filter, point of use filter). A malfunction of such a device would place product quality directly at risk.

Critical Instrument
An instrument that measures a GMP Critical Parameter, used to monitor and document that parameter.

Critical Parameter
A GMP or product quality parameter (e.g., differential pressure, unidirectional airflow pattern) that must be maintained within predefined limits to ensure product SISPQ (Strength, Identity, Safety, Purity, or Quality).

Critical Point
The combination of pressure and temperature at which the gas and liquid phases of a substance become indistinguishable.

Critical Process Step
For sterile products, this normally is an activity where product or product contact parts are exposed to the surrounding environment.

Critical Step(s)
The point or points in the process which, if not carried out properly or if contaminated, will not allow drug substances to be made such that they will meet their intended characterizations and impurity profiles.

Critical Surface
The part of the working surface to be protected from particulate contamination. It is within the Critical Zone.

Critical System
A structural, mechanical, or electrical system that can impact the processing parameters and attributes of the finished product or regulatory study. Critical systems may include utilities, process equipment, and systems.

Cross Contamination
The measurable and detrimental contamination of a material or product with another material or product.

Crossing Over
The breaking during meiosis of one maternal and one paternal chromosome, the exchanging of corresponding sections of DNA, and the rejoining of the chromosomes. This process can result in an exchange of alleles between chromosomes.

Cryogenic Liquid
A fluid that has a normal boiling point below -150°F (-101.1°C).

Cryptography
The mathematical science of deliberately scrambling and unscrambling information. Information is protected by being transformed (encrypted) into an unreadable format, called cipher text. Only those who posses a secret key can decypher (or decrypt) that message into plain text.

Culture Medium
Any nutrient system for the artificial cultivation of bacteria or other cells; usually a complex mixture of organic and inorganic materials.
current Good Manufacturing Practices (cGMP's)

Cut
An enzymatic break that occurs in both strands of a DNA molecule opposite one another by restriction enzymes.

Cystic Fibrosis
An inherited disease in which thick mucus clogs the lungs and blocks the ducts of the pancreas.

Cytokine
A protein that acts as a chemical messenger to stimulate cell migration, usually toward where the protein is released. Interlukins, lymphokines, and interferons are the most common.

Cytolysis
The dissolution of cells particularly by destruction of their cell membrane.

Cytopathic
Damaging to cells.

Cytoplasm
The protoplasmic contents of the cell outside the nucleus in which the cell's organelles are suspended.

Cytosine (C)
A pyrimidine occurring as a fundamental unit or base of nucleic acids.

Cytostatic Agents
Therapeutics that inhibit cell division and growth. This term can refer to machinery, such as those that would freeze cells.

Cytotoxic
Poisonous to cells.

Cytotoxicity
The ability of a substance or compound to cause a cytotoxic effect.

D

D5W (5 D/W)
One of the most prevalent of LVPs (also see: LVP (Large Volume Parenteral)). Five percent dextrose in water. Presence of dextrose presents significant filtration problems. Usually requires activated charcoal pretreatment.

Dalton
The unit of molecular weight, equal to the weight of a hydrogen atom.

Data Integrity
The validity of data and their relationships. For electronic records to be trustworthy and reliable, the links between raw data, metadata, and results must not be compromised or broken. Without data integrity, it is not possible to regenerate a previous result reliably.

Data Migration
The process of translating data from one system to another when a company replaces the current computing systems with a new one. CFR 21 Part 11 mandates that data migration implementation create accurate and complete copies of the records when they are moved to a new system.

DDC (Direct Digital Control)
A collection of control units (analog and discrete) connected into a data highway, usually with a host or alarming/recording computer attached.

D Value
The time under a stated set of exposure conditions (temperature in an autoclave) required to reduce a microbial population by a factor of 90% (e.g. from 10,000 to 1,000).

Dead Leg
An area of entrapment in a vessel or piping run that could lead to contamination of the product. In a piping system, a non-flowing pocket, tee, or extension from a primary piping run that exceeds a defined number of pipe diameters from the ID of the primary pipe. Denoted by the term L/D or L/A, where L is equal to the leg extension perpendicular to the normal flow pattern or direction, A is the annular gap width, and D is equal to the ID (or inside dimension) of the extension or leg. In some existing standards, the dimension L is measured from the centerline of the primary pipe. For bioprocessing systems, an L/D of 2:1 is achievable with today's component technology for most valving and piping configurations.

Decontamination
A process that reduces contaminating substances to a defined acceptance level.

Deflagration
An exothermic reaction, such as the extremely rapid oxidation of a combustible dust or flammable vapor in air, in which the reaction progresses through the unburned material at a rate less than the velocity of sound. A deflagration can have an explosive effect.

Degrading
Deterioration of a surface finish so that pieces of the finish (or substrate) material large enough to be visible to the unaided eye, dislodge without any direct physical contact and fall from the surface of the material.

Deionization
Removing dissolved ions from solution by passing the solution through a bed of ion exchange resin, consisting of polymer beads that exchange hydrogen ions for cations and hydroxyl ions for anions in solution. The ionic impurities remain bound to the resins and the hydrogen and hydroxyl ions combine with each other to form water.

Deletion Map
A description of a specific chromosome that uses defined mutations - specific deleted areas in the genome - as "biochemical signposts", or markers for specific areas.

De Minimis Release
The release of viable microbiological agents or eukaryotic cells that does not result in the establishment of disease in healthy people, plants, or animals; or in uncontrolled proliferation of any microbiological agents or eukaryotic cells.

Dementia
Severe impairment of mental functioning.

Demineralization
Sometimes used interchangeably with deionization, it refers to the removal of minerals and mineral salts using ion exchange.